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Strains
S. lividans TK24
Peripherome
Exportome
Membranome
Secretome
Sec
TAT
Type VII
S. coelicolor
S. lividans
TK24 vs
S. coelicolor
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S. lividans
TK24 TAT
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S. lividans
TK24 TAT
N
Nucleoid (0)
r
Ribosomal (0)
A
Cytoplasmic (0)
F2
Peripheral inner membrane, facing periplasm (1)
E
Inner membrane lipoproteins (0)
P
Peptidoglycan Binding (4)
X
Extra-cellular (156)
B
Integral inner membrane (0)
F1
Peripheral inner membrane, facing cytoplasm (0)
show distribution
Sub-cellular topologies of Streptomyces lividans TK24 proteins
156
# Proteins
TK24
N
0
A
0
r
0
F1
0
B
0
F2
1
E
0
P
4
Secretory
0
X
156
Accession
(Uniprot)
Entry
Name
(Uniprot) (*)
Gene
Name
(Uniprot) (*)
Gene
ID
(Uniprot) (*)
Protein names
(SToPSdb) (*)
Symbol
Level of
evidence
Existing
Rules
Homologous
Protein
in E.coli K-12 (STEPdb) (*)
Sub-cellular
Location
(STEPdb)
Manual Curation in SToPs
Comments
UniProt Name:
Secreted lipoprotein (TAT) - ABC-transporter polyamine-binding lipoprotein
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
By similarity
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQC6
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
58
Cleavage Score (Cmax):
0.204
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 57 [IPA-AG]
Score:
0.982
Predict Now
D6EQC6
D6EQC6_STRLI
SLIV_10290
Secreted protein (Tat) - ABC-transporter polyamine-binding protein
X
By similarity
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
4-aminobutyrate aminotransferase (EC 2.6.1.19)
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQB7
SMART database
SMART: gabT
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
46
Cleavage Score (Cmax):
0.14
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 45 [ARA-GG]
Score:
0.976
Predict Now
D6EQB7
D6EQB7_STRLI
gabT
SLIV_10245
Secreted protein (Tat) - 4-aminobutyrate aminotransferase (EC 2.6.1.19)
X
Experimental
SToPS
P22256
STEPdb
F1
Manual Curation in SToPs
Comments
UniProt Name:
Secreted lipoprotein (TAT)
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 20487278
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQA8
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
24
Cleavage Score (Cmax):
0.137
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
26
Score:
9.21913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 37 [CGG-SD]
Score:
0.976
Predict Now
D6EQA8
D6EQA8_STRLI
SLIV_10195
Secreted protein (Tat) - Uncharacterized protein
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted lipoprotein (TAT) of unknown function
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQ92
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
43
Cleavage Score (Cmax):
0.193
LipoP 1.0
Prediction:
SpII
Cleavage site amino acid:
30
Score:
17.0065
Cleavage Rule:
Pos+2=T
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 42 [AGA-GP]
Score:
0.983
Predict Now
D6EQ92
D6EQ92_STRLI
SLIV_10115
Secreted protein (Tat) of unknown function
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Hydrolase
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EPR8
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
54
Cleavage Score (Cmax):
0.178
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 39 [APA-AG]
Score:
0.986
Predict Now
D6EPR8
D6EPR8_STRLI
SLIV_30225
Secreted protein (Tat) - Metallo-hydrolase/oxidoreductase superfamily
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted lipoprotein (TAT) - Solute-binding family 1 protein (IPR006059)
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 20487278
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EPN8
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
36
Cleavage Score (Cmax):
0.158
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
35
Score:
1.68966
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 35 [ATA-CG]
Score:
0.969
Predict Now
D6EPN8
D6EPN8_STRLI
SLIV_30065
Secreted protein (Tat) - Solute-binding family 1 protein (IPR006059)
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Peptidase S1, PA clan (IPR009003)
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EP76
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
43
Cleavage Score (Cmax):
0.321
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
33
Score:
15.3637
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 36 [CGG-AE]
Score:
0.962
Predict Now
D6EP76
D6EP76_STRLI
SLIV_09630
Secreted protein (Tat) - Peptidase S1, PA clan (IPR009003)
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Glycoside hydrolase family 36 protein
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EP25
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
35
Cleavage Score (Cmax):
0.622
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
34
Score:
9.2606
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 34 [AAA-AP]
Score:
0.992
Predict Now
D6EP25
D6EP25_STRLI
SLIV_09375
Secreted protein (Tat) - Glycoside hydrolase family 36 protein
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Glycosyl hydrolase-like 10 (IPR003790) (UPFUPF0748-like protein)
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 17093047
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ENR6
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
26
Cleavage Score (Cmax):
0.761
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
25
Score:
8.17076
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 25 [ASA-AT]
Score:
0.962
Predict Now
D6ENR6
D6ENR6_STRLI
SLIV_29775
Secreted protein (Tat) - Glycosyl hydrolase-like 10 (IPR003790) (UPFUPF0748-like protein)
X
Experimental
SToPS
P64426
STEPdb
I
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Short chain dehydrogenase
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ENP8
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
34
Cleavage Score (Cmax):
0.288
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 33 [RLA-SE]
Score:
0.973
Predict Now
D6ENP8
D6ENP8_STRLI
SLIV_29685
Secreted protein (Tat) - Short chain dehydrogenase
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted lipoprotein (TAT) - Peptidyl-prolyl cis-trans isomerase
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 17093047
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ENL9
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
33
Cleavage Score (Cmax):
0.257
LipoP 1.0
Prediction:
SpII
Cleavage site amino acid:
19
Score:
23.8037
Cleavage Rule:
Pos+2=G
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 45 [TSA-AP]
Score:
0.771
Predict Now
D6ENL9
D6ENL9_STRLI
SLIV_29545
Secreted protein (Tat) - Peptidyl-prolyl cis-trans isomerase
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Protein of unknown function containing DUF839 domain
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 17093047
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6END3
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
22
Cleavage Score (Cmax):
0.21
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 85 [AQA-AP]
Score:
0.99
Predict Now
D6END3
D6END3_STRLI
SLIV_19350
Secreted protein (Tat) - Protein of unknown function containing DUF839 domain
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Aminotransferase
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EN30
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
49
Cleavage Score (Cmax):
0.396
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 48 [VQA-AV]
Score:
0.911
Predict Now
D6EN30
D6EN30_STRLI
SLIV_08910
Secreted protein (Tat) - Aminotransferase
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Thioredoxin-like protein
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EMX7
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
46
Cleavage Score (Cmax):
0.25
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
45
Score:
15.6138
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 45 [AFA-LT]
Score:
0.985
Predict Now
D6EMX7
D6EMX7_STRLI
SLIV_08650
Secreted protein (Tat) - Thioredoxin-like protein
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Serine protease (Streptogrisin-B) (EC 3.4.21.81)
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EMJ7
SMART database
SMART: sprB
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
39
Cleavage Score (Cmax):
0.506
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
38
Score:
23.0638
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 38 [ANA-AP]
Score:
0.977
Predict Now
D6EMJ7
D6EMJ7_STRLI
sprB
SLIV_29015
Secreted protein (Tat) - Serine protease (Streptogrisin-B) (EC 3.4.21.81)
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Integral membrane protein of unknown function
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EME7
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
48
Cleavage Score (Cmax):
0.238
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
No
Number of TMs:
1
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 45 [DTA-KG]
Score:
0.977
Predict Now
D6EME7
D6EME7_STRLI
SLIV_19005
Secreted protein (Tat) - Uncharacterized protein
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - TolB-like protein
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 17093047
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ELQ5
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
41
Cleavage Score (Cmax):
0.317
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
40
Score:
5.64158
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 40 [AAA-QP]
Score:
0.998
Predict Now
D6ELQ5
D6ELQ5_STRLI
SLIV_07880
Secreted protein (Tat) - TolB-like protein
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Putative esterase (IPR013830) (TAT signal - ??)
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ELD9
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
29
Cleavage Score (Cmax):
0.536
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
28
Score:
13.5643
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 28 [AQA-GG]
Score:
0.977
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D6ELD9
D6ELD9_STRLI
SLIV_28310
Secreted protein (Tat) - Putative esterase (IPR013830) (TAT signal - ??)
X
Potential
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein (TAT) - Protein with WD40/YVTN repeat-like-containing domain (IPR015943)
Localization:
-
Notes:
Experimentally validated (agarase reporter assay); PMID: 17093047
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ELB3
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
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Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
37
Cleavage Score (Cmax):
0.608
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
29
Score:
10.2386
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 36 [ALA-ST]
Score:
0.999
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D6ELB3
D6ELB3_STRLI
SLIV_28185
Secreted protein (Tat) - Protein with WD40/YVTN repeat-like-containing domain (IPR015943)
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Integral membrane protein of unknown function
Localization:
-
Notes:
-
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Potential
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6ELA6
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
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Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
Yes
Cleavage site amino acid:
45
Cleavage Score (Cmax):
0.763
LipoP 1.0
Prediction:
SpI
Cleavage site amino acid:
38
Score:
9.61352
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
Transmembrane, TMs: 1
Phobius
Signal Peptide:
Yes
Number of TMs:
0
PRED-TAT
Localization:
Tat signal peptide predicted. Most likely cleavage site: 1- 44 [AHA-DE]
Score:
0.999
Predict Now
D6ELA6
D6ELA6_STRLI
SLIV_28150
Secreted protein (Tat) - small unknown function
X
Potential
SToPS
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©2017 Copyright KU Leuven and FORTH/ICE-HT. Last Update: January 2019