Table: Correlation between SToPSdb and Gene Ontology terms  

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Correlation between SToPSdb and Gene Ontology terms

N Nucleoid (484) r Ribosomal (67) A Cytoplasmic (4245) F2 Peripheral inner membrane, facing periplasm (0) E Inner membrane lipoproteins (180) P Peptidoglycan Binding (21) X Extra-cellular (533) B Integral inner membrane (1597) F1 Peripheral inner membrane, facing cytoplasm (369)

Sub-cellular topologies of Streptomyces lividans T24 proteins

4245

# Proteins
  T24
N484
A4245
r67
F1369
B1597
F20
E180
P21
Secretory0
X533


SToPSdb
(Short Name) (*)
SToPSdb
(Full Name) (*)
Gene ontology
term (*)
Gene ontology
ID
Gram - (*)
Gram+ (*)
N
Nucleoid
Nucleoid
+
+
r
Ribosome
Ribosome
+
+
A
Cytoplasmic
Cytoplasmic part
+
+
F1
Peripheral inner membrane protein facing the cytoplasm
Extrinsic to internal side of plasma membrane
+
+
B
Integral Inner Membrane
Integral to plasma membrane
+
+
F2
Peripheral inner membrane protein facing the periplasm
Extrinsic to external side of plasma membrane
+
+
E
Inner Membrane Lipoprotein
Intrinsic to external side of plasma membrane
+
+
G
Periplasmic
Periplasmic space
+
 
I
Outer Membrane Lipoprotein
Intrinsic to internal side of cell outer membrane
+
 
F3
Peripheral outer membrane protein facing the periplasm
Extrinsic to internal side of cell outer membrane
+
 
H
Outer Membrane b-barrel protein
Integral to cell outer membrane
+
 
F4
Peripheral outer membrane protein facing the extracellular space
Extrinsic to external side of cell outer membrane
+
 
X
Extracellular
Extracellular matrix part
+
+
 
 
Flagellum
+
 
 
 
Pilus
+
 
P
Peptidoglycan binding
peptidoglycan binding
 
+
V
Extracellular vesicle
Bacterial extracellular vesicle
 
+
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